Whoa horsey...
That is indeed a PRTAlpha box. The drive system is practically bulletproof - so don't worry. Make sure that the Emergency stop switch is plugged into the board, and check for other loose connections in the control box.
Also, make sure of the following, regarding USB communications:
1) USB cable is no longer than 10'
2) You have a USB 2.0 hub plugged into your computer & the Bot plugged into the hub
3) You run the SpeedTest.exe under the SB3 Diagnostic folder & get 70% or greater efficiency.
Make sure that you are running the correct PRT Alpha configuration file for your machine. You can find it via UR, say yes/ok 3X and find it in the folder labelled 'For older Shopbots'. Your Unit Values (VU) should be 1273.xxx or around that for a PRT Alpha with AS911 motors.
-B